PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G078100.1
Common NameB456_005G078100, LOC105797031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 330aa    MW: 36072.9 Da    PI: 6.9517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G078100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21123172255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a+++a+++++g
  Gorai.005G078100.1 123 RYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAARAYDEAALRFRG 172
                         7********.**********9...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-15123172IPR001471AP2/ERF domain
SMARTSM003801.2E-37123186IPR001471AP2/ERF domain
PROSITE profilePS5103225.791123180IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23123181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-33123181IPR001471AP2/ERF domain
PRINTSPR003677.6E-12124135IPR001471AP2/ERF domain
CDDcd000184.11E-16131182No hitNo description
PRINTSPR003677.6E-12146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MFFGSQSHHQ ATEMSAMVSA LTHVVSGQRF AAWDCYPFNM DATCFQQTQT GSASGLAPCK  60
IGQKRGRAED VTAHLVQTSS HAHSSSPATS VTEEIETAAT TSMETAGEAA AASNEETGEP  120
RRRYRGVRQR PWGKWAAEIR DPNKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP  180
ENVRVVVPQP MQNFPTTQTP VSSSQTTHFP SYYQSPPTAD MLRDYWQYSQ LLQSCNDFHE  240
QQATSLLNQM IQSSQLPNVQ PPLLSSSLSP PLLSSPSSSA SASFPLLFGE QHQMGISRPP  300
FNQTQVSQSD FPVPPPPWSH PGHHSSSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-24122183163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-23122183466ATERF1
2gcc_A1e-23122183466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482409.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0D2SCK30.0A0A0D2SCK3_G
STRINGPOPTR_0005s21690.12e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-16ethylene response factor 110
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]